Useful Links

Library Design Schematics (for planning custom workflows, etc)
Single Cell Data Analysis

Seurat (R)

Scanpy (Python)

Introduction to single-cell RNA-seq data analysis in Python using scanpy (Dr. Maren Büttner, Postdoc at the ICB of the Helmholtz Munich, explains how to conduct analysis using scanpy in a 9-part series)

Guidelines for the computational analysis of single-cell RNA sequencing data

awesome-single-cell (software packages for single cell analysis)

Slides Webinar (Jon's Loupe Tutorial)

scrna-tools: catalogue of tools for analysing single-cell RNA seq data